9/23/2023 0 Comments Bam file format![]() ![]() ![]() SRA accepts binary files such as BAM, SFF, and HDF5 formats and text formats such as FASTQ.īinary Alignment/Map files (BAM) represent one of the preferred SRA submission formats.Therefore, FASTA and other sequence-only formats are not sufficient for submission! FASTA can, however, be submitted as a reference sequence(s) for BAM files or as part of a FASTA/QUAL pair (see below). The SRA is a raw data archive, and requires per-base quality scores for all submitted data.This page reviews the submission file formats currently supported by the Sequence Read Archives (SRA) at NCBI, EBI, and DDBJ, and gives guidance to submitters about current and future file formats and policies regarding SRA submissions. Helicos fastq with a fixed ASCII-based Phred value for quality. ![]() PacBio CCS (Circular Consensus Sequence) or RoI (Read of Insert) read.QIIME de-multiplexed sequences in fastq. ![]()
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